Description

contactin-like putative cell adhesion molecule [Source:VB Community Annotation;Acc:AGAP000007]

Location
About this transcript

This transcript has 5 exons, is annotated with 68 domains and features, is associated with 11 variations and maps to 24 oligo probes.

Gene

This transcript is a product of gene AGAP000007 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
IGL1AGAP000007-RA44721332aaAGAP000007-PA
 
Protein coding
Q7QEI6 XM_311153.3
XP_311153.3
Statistics

Exons: 5, Coding exons: 5, Transcript length: 4,472 bps, Translation length: 1,332 residues

Version

AGAP000007-RA.

Type

Known protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Frameshift introns

Frameshift introns occur at intron number(s) 1.

Transcript-based displays