Location
About this transcript

This transcript has 7 exons, is annotated with 27 domains and features, is associated with 25 variations and maps to 32 oligo probes.

Gene

This transcript is a product of gene AGAP000080 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
NovelAGAP000080-RE2883960aaAGAP000080-PE
 
Protein coding
F5HJS6 XM_003436861.1
XP_003436909.1
NovelAGAP000080-RA2739912aaAGAP000080-PA
 
Protein coding
A0NCL3 F5HJS6 Q5S3Q0
XM_001237354.2
XM_003436861.1
XP_001237355.2
XP_003436909.1
NovelAGAP000080-RD2277758aaAGAP000080-PD
 
Protein coding
A0NCL4 F5HJS6 Q5S3Q0
Q5S3Q1 Q5XXR5
XM_001237355.2
XM_003436861.1
XP_001237356.2
XP_003436909.1
NovelAGAP000080-RC2147592aaAGAP000080-PC
 
Protein coding
A0NCL3 Q5TUU8 Q5XXR4
Q5XXR5 Q7QEP1
XM_001237354.2
XM_311072.4
XM_566342.3
XP_001237355.2
XP_311072.4
XP_566342.2
NovelAGAP000080-RB2133710aaAGAP000080-PB
 
Protein coding
Q5XXR4 Q7QEP1 XM_311072.4
XP_311072.4
Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,277 bps, Translation length: 758 residues

Version

AGAP000080-RD.

Type

Protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Transcript-based displays