Description

chloride intracellular channel [Source:VB External Description;Acc:AGAP000943]

Location
About this transcript

This transcript has 7 exons, is annotated with 7 domains and features, is associated with 3 variations and maps to 40 oligo probes.

Gene

This transcript is a product of gene AGAP000943 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
NovelAGAP000943-RF2198257aaAGAP000943-PF
 
Protein coding
F5HJ04 XM_003437097.1
XM_003437098.1
XM_003437099.1
XM_003437100.1
XM_003437101.1
XM_309131.4
XP_003437145.1
XP_003437146.1
XP_003437147.1
XP_003437148.1
XP_003437149.1
XP_309131.4
NovelAGAP000943-RC2188257aaAGAP000943-PC
 
Protein coding
F5HJ04 XM_003437097.1
XM_003437098.1
XM_003437099.1
XM_003437100.1
XM_003437101.1
XM_309131.4
XP_003437145.1
XP_003437146.1
XP_003437147.1
XP_003437148.1
XP_003437149.1
XP_309131.4
NovelAGAP000943-RE2181263aaAGAP000943-PE
 
Protein coding
F5HJ09 XM_003437102.1
XP_003437150.1
NovelAGAP000943-RB2169257aaAGAP000943-PB
 
Protein coding
F5HJ04 XM_003437097.1
XM_003437098.1
XM_003437099.1
XM_003437100.1
XM_003437101.1
XM_309131.4
XP_003437145.1
XP_003437146.1
XP_003437147.1
XP_003437148.1
XP_003437149.1
XP_309131.4
NovelAGAP000943-RG2167257aaAGAP000943-PG
 
Protein coding
F5HJ04 XM_003437097.1
XM_003437098.1
XM_003437099.1
XM_003437100.1
XM_003437101.1
XM_309131.4
XP_003437145.1
XP_003437146.1
XP_003437147.1
XP_003437148.1
XP_003437149.1
XP_309131.4
NovelAGAP000943-RD2163257aaAGAP000943-PD
 
Protein coding
F5HJ04 F5HJ09 XM_003437097.1
XM_003437098.1
XM_003437099.1
XM_003437100.1
XM_003437101.1
XM_309131.4
XP_003437145.1
XP_003437146.1
XP_003437147.1
XP_003437148.1
XP_003437149.1
XP_309131.4
NovelAGAP000943-RA2008257aaAGAP000943-PA
 
Protein coding
F5HJ04 XM_003437097.1
XM_003437098.1
XM_003437099.1
XM_003437100.1
XM_003437101.1
XM_309131.4
XP_003437145.1
XP_003437146.1
XP_003437147.1
XP_003437148.1
XP_003437149.1
XP_309131.4
Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,198 bps, Translation length: 257 residues

Version

AGAP000943-RF.

Type

Known protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Transcript-based displays