Description

glycine hydroxymethyltransferase [Source:VB External Description;Acc:AGAP001065]

Location
About this transcript

This transcript has 3 exons, is annotated with 11 domains and features, is associated with 4 variations and maps to 43 oligo probes.

Gene

This transcript is a product of gene AGAP001065 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
NovelAGAP001065-RE1925467aaAGAP001065-PE
 
Protein coding
F5HM13 XM_003437149.1
XM_003437150.1
XM_003437151.1
XM_003437152.1
XM_003437153.1
XM_003437154.1
XM_003437155.1
XM_318298.5
XP_003437197.1
XP_003437198.1
XP_003437199.1
XP_003437200.1
XP_003437201.1
XP_003437202.1
XP_003437203.1
XP_318298.5
NovelAGAP001065-RG1806467aaAGAP001065-PG
 
Protein coding
F5HM13 XM_003437149.1
XM_003437150.1
XM_003437151.1
XM_003437152.1
XM_003437153.1
XM_003437154.1
XM_003437155.1
XM_318298.5
XP_003437197.1
XP_003437198.1
XP_003437199.1
XP_003437200.1
XP_003437201.1
XP_003437202.1
XP_003437203.1
XP_318298.5
NovelAGAP001065-RA1725467aaAGAP001065-PA
 
Protein coding
F5HM13 XM_003437149.1
XM_003437150.1
XM_003437151.1
XM_003437152.1
XM_003437153.1
XM_003437154.1
XM_003437155.1
XM_318298.5
XP_003437197.1
XP_003437198.1
XP_003437199.1
XP_003437200.1
XP_003437201.1
XP_003437202.1
XP_003437203.1
XP_318298.5
NovelAGAP001065-RC1673467aaAGAP001065-PC
 
Protein coding
F5HM13 XM_003437149.1
XM_003437150.1
XM_003437151.1
XM_003437152.1
XM_003437153.1
XM_003437154.1
XM_003437155.1
XM_318298.5
XP_003437197.1
XP_003437198.1
XP_003437199.1
XP_003437200.1
XP_003437201.1
XP_003437202.1
XP_003437203.1
XP_318298.5
NovelAGAP001065-RB1656467aaAGAP001065-PB
 
Protein coding
F5HM13 XM_003437149.1
XM_003437150.1
XM_003437151.1
XM_003437152.1
XM_003437153.1
XM_003437154.1
XM_003437155.1
XM_318298.5
XP_003437197.1
XP_003437198.1
XP_003437199.1
XP_003437200.1
XP_003437201.1
XP_003437202.1
XP_003437203.1
XP_318298.5
NovelAGAP001065-RH1637467aaAGAP001065-PH
 
Protein coding
F5HM13 XM_003437149.1
XM_003437150.1
XM_003437151.1
XM_003437152.1
XM_003437153.1
XM_003437154.1
XM_003437155.1
XM_318298.5
XP_003437197.1
XP_003437198.1
XP_003437199.1
XP_003437200.1
XP_003437201.1
XP_003437202.1
XP_003437203.1
XP_318298.5
NovelAGAP001065-RD1616467aaAGAP001065-PD
 
Protein coding
F5HM13 XM_003437149.1
XM_003437150.1
XM_003437151.1
XM_003437152.1
XM_003437153.1
XM_003437154.1
XM_003437155.1
XM_318298.5
XP_003437197.1
XP_003437198.1
XP_003437199.1
XP_003437200.1
XP_003437201.1
XP_003437202.1
XP_003437203.1
XP_318298.5
NovelAGAP001065-RF1535467aaAGAP001065-PF
 
Protein coding
F5HM13 XM_003437149.1
XM_003437150.1
XM_003437151.1
XM_003437152.1
XM_003437153.1
XM_003437154.1
XM_003437155.1
XM_318298.5
XP_003437197.1
XP_003437198.1
XP_003437199.1
XP_003437200.1
XP_003437201.1
XP_003437202.1
XP_003437203.1
XP_318298.5
Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,673 bps, Translation length: 467 residues

Version

AGAP001065-RC.

Type

Known protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Transcript-based displays