Description

aprataxin [Source:VB External Description;Acc:AGAP004307]

Location
About this transcript

This transcript has 3 exons, is annotated with 7 domains and features, is associated with 10 variations and maps to 29 oligo probes.

Gene

This transcript is a product of gene AGAP004307 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
NovelAGAP004307-RB972189aaAGAP004307-PB
 
Protein coding
Q7PHF8 XM_003436733.1
XM_313579.3
XP_003436781.1
XP_313579.3
NovelAGAP004307-RA656189aaAGAP004307-PA
 
Protein coding
Q7PHF8 XM_003436733.1
XM_313579.3
XP_003436781.1
XP_313579.3
Statistics

Exons: 3, Coding exons: 3, Transcript length: 972 bps, Translation length: 189 residues

Version

AGAP004307-RB.

Type

Protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Transcript-based displays