Description

peptidoglycan recognition protein (long) [Source:VB Community Annotation;Acc:AGAP005203]

Location
About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 26 variations and maps to 48 oligo probes.

Gene

This transcript is a product of gene AGAP005203 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
PGRPLCAGAP005203-RA2033422aaAGAP005203-PA
 
Protein coding
A7UTA2 XM_001688474.1
XP_001688526.1
PGRPLCAGAP005203-RB1958397aaAGAP005203-PB
 
Protein coding
Q7Q9J6 XM_314103.4
XP_314103.4
PGRPLCAGAP005203-RC1895464aaAGAP005203-PC
 
Protein coding
A7UTA1 XM_001688473.1
XP_001688525.1
PGRPLCAGAP005203-RJ1889462aaAGAP005203-PJ
 
Protein coding
A0A1S4GP34 -
PGRPLCAGAP005203-RD1748414aaAGAP005203-PD
 
Protein coding
Q5TSR1 XM_558599.3
XP_558599.3
PGRPLCAGAP005203-RH1742412aaAGAP005203-PH
 
Protein coding
A0A1S4GNH6 -
PGRPLCAGAP005203-RF1660432aaAGAP005203-PF
 
Protein coding
A0A1S4GNF6 -
PGRPLCAGAP005203-RE1585407aaAGAP005203-PE
 
Protein coding
Q5TSR0 XM_558600.3
XP_558600.3
Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,033 bps, Translation length: 422 residues

Version

AGAP005203-RA.

Type

Known protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Transcript-based displays