Description

collagen, type IV, alpha [Source:VB External Description;Acc:AGAP009200]

Location
About this transcript

This transcript has 6 exons, is annotated with 63 domains and features, is associated with 86 variations and maps to 58 oligo probes.

Gene

This transcript is a product of gene AGAP009200 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
NovelAGAP009200-RA59141789aaAGAP009200-PA
 
Protein coding
A0A1S4H159 A0NG88 Q7PVR8
Q8T5G4 Q8T7S4
XM_001238234.1
XM_319976.3
XP_001238235.1
XP_319976.3
Statistics

Exons: 6, Coding exons: 6, Transcript length: 5,914 bps, Translation length: 1,789 residues

Version

AGAP009200-RA.

Type

Protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Transcript-based displays