Description

cadherin [Source:VB External Description;Acc:AGAP009717]

Location
About this transcript

This transcript has 12 exons, is annotated with 90 domains and features, is associated with 293 variations and maps to 9 oligo probes.

Gene

This transcript is a product of gene AGAP009717 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
NovelAGAP009717-RA51841727aaAGAP009717-PA
 
Protein coding
Q7Q1M6 XM_318783.5
XP_318783.4
Statistics

Exons: 12, Coding exons: 12, Transcript length: 5,184 bps, Translation length: 1,727 residues

Version

AGAP009717-RA.

Type

Protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Frameshift introns

Frameshift introns occur at intron number(s) 9.

Transcript-based displays