Description

ubiquitin-protein ligase E3 C [Source:VB External Description;Acc:AGAP011474]

Location
About this transcript

This transcript has 11 exons, is annotated with 16 domains and features, is associated with 87 variations and maps to 19 oligo probes.

Gene

This transcript is a product of gene AGAP011474 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
NovelAGAP011474-RA33871128aaAGAP011474-PA
 
Protein coding
Q7Q342 XM_317832.5
XP_317832.4
Statistics

Exons: 11, Coding exons: 11, Transcript length: 3,387 bps, Translation length: 1,128 residues

Version

AGAP011474-RA.

Type

Known protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Frameshift introns

Frameshift introns occur at intron number(s) 4.

Transcript-based displays