Description

long wavelength sensitive opsin [Source:VB Community Annotation;Acc:AGAP012982]

Location
About this transcript

This transcript has 2 exons, is annotated with 32 domains and features, is associated with 9 variations and maps to 38 oligo probes.

Gene

This transcript is a product of gene AGAP012982 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
GPROP3AGAP012982-RA1405370aaAGAP012982-PA
 
Protein coding
F5HMY2 XM_001238568.3
XM_003435710.1
XM_003435711.1
XP_003435758.1
XP_003435759.1
Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,405 bps, Translation length: 370 residues

Version

AGAP012982-RA.

Type

Known protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Transcript-based displays