Description

long wavelength sensitive opsin [Source:VB Community Annotation;Acc:AGAP013149]

Location
About this transcript

This transcript has 2 exons, is annotated with 32 domains and features, is associated with 9 variations and maps to 45 oligo probes.

Gene

This transcript is a product of gene AGAP013149 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
GPROP1AGAP013149-RA1434370aaAGAP013149-PA
 
Protein coding
F5HMX8 XM_003435715.1
XP_003435763.1
Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,434 bps, Translation length: 370 residues

Version

AGAP013149-RA.

Type

Protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Transcript-based displays