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Variant Effect Predictor:

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This tool takes a list of variant positions and alleles, and predicts the effects of each of these on overlapping transcripts and regulatory regions annotated in Ensembl. The tool accepts substitutions, insertions and deletions as input, see data formats.

Upload is limited to 750 variants; lines after the limit will be ignored. Users with more than 750 variations can split files into smaller chunks, use the standalone perl script or the variation API. See also full documentation

NB: Ensembl now by default uses Sequence Ontology terms to describe variation consequences. See this page for details

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