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Enter the Query Sequence
Either
Paste sequences (max 30 sequences) in FASTA or plain text:
Or
Upload a file containing one or more FASTA sequences
Or
Enter a sequence ID or accession (EMBL, UniProt, RefSeq)
Or
Enter an existing ticket ID:
dna queries
 
 
peptide queries
 
 
Select the databases to search against
Select species:
Use 'ctrl' key to select multiple species
Acyrthosiphon_pisum
Aedes_aegypti
Amphimedon_queenslandica
Anopheles_darlingi
Anopheles_gambiae
Apis_mellifera
Atta_cephalotes
Bombyx_mori
Brugia_malayi
Caenorhabditis_brenneri
Caenorhabditis_briggsae
Caenorhabditis_elegans
Caenorhabditis_japonica
Caenorhabditis_remanei
Culex_quinquefasciatus
Danaus_plexippus
Daphnia_pulex
Drosophila_ananassae
Drosophila_erecta
Drosophila_grimshawi
Drosophila_melanogaster
Drosophila_mojavensis
Drosophila_persimilis
Drosophila_pseudoobscura
Drosophila_sechellia
Drosophila_simulans
Drosophila_virilis
Drosophila_willistoni
Drosophila_yakuba
Heliconius_melpomene
Ixodes_scapularis
Loa_loa
Megaselia_scalaris
Nasonia_vitripennis
Nematostella_vectensis
Pediculus_humanus
Pristionchus_pacificus
Schistosoma_mansoni
Strigamia_maritima
Strongylocentrotus_purpuratus
Tribolium_castaneum
Trichinella_spiralis
Trichoplax_adhaerens
dna database
CDNA_PSEUDO
CDNA_KNOWN
CDNA_NOVEL
RNA_NC
LATESTGP
LATESTGP_MASKED
CDNA_ALL
CDNA_ABINITIO
peptide database
PEP_KNOWN
PEP_ALL
PEP_NOVEL
PEP_ABINITIO
Select the Search Tool
BLASTN
BLASTP
BLASTX
TBLASTN
TBLASTX
Search sensitivity:
Optimise search parameters to find the following alignments
Allow some local missmatch
Normal
Distant homologies
About BlastView
BlastView provides an integrated platform for sequence similarity searches against Ensembl metazoa databases, offering access to both BLAST and BLAT programs.
We would like to hear your impressions of BlastView, especially regarding functionality that you would like to see provided in the future. Many thanks for your time.
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