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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LOC551490

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Description

collagen alpha chain CG42342, transcript variant X1

Location

Primary_assembly CM009942.2: 995,237-1,246,250 reverse strand.

Amel_HAv3.1:CM009942.2

About this gene

This gene has 15 transcripts (splice variants), 72 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	Flags
-	XM_026444364	3469	689aa	XP_026300149	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	XM_026444365	3466	688aa	XP_026300150	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_026444366	3457	685aa	XP_026300151	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A087ZND0	-
-	XM_026444367	3436	678aa	XP_026300152	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_026444369	3433	677aa	XP_026300154	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_026444368	3433	677aa	XP_026300153	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A087ZND1	-
-	XM_026444371	3421	673aa	XP_026300156	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_026444373	3400	666aa	XP_026300158	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_026444377	3356	603aa	XP_026300162	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_026444375	3253	617aa	XP_026300160	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_026444376	3220	606aa	XP_026300161	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_026444372	3194	668aa	XP_026300157	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_026444374	3158	656aa	XP_026300159	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_026444378	3056	603aa	XP_026300163	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	XM_026444379	3055	603aa	XP_026300164	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A087ZNC9	-

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Summary

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