Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by WormBase

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Gene: clp-1 WBGene00000542

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Description

Calpain clp-1 [Source:NCBI gene;Acc:176122]

Location

Chromosome III: 7,979,959-7,986,380 forward strand.

WBcel235:BX284603.4

About this gene

This gene has 6 transcripts (splice variants), 499 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	C06G4.2c.1	2894	113aa	C06G4.2c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34308	-	-
-	C06G4.2a.2	2861	780aa	C06G4.2a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34308	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	C06G4.2a.1	2734	780aa	C06G4.2a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34308	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	C06G4.2b.1	2595	737aa	C06G4.2b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34308	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C06G4.2d.1	2565	759aa	C06G4.2d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34308	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C06G4.2b.2	2523	737aa	C06G4.2b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34308	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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