Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by WormBase

.

Gene: hif-1 WBGene00001851

.

Description

Hypoxia-inducible factor 1 [Source:NCBI gene;Acc:180359]

Location

Chromosome V: 20,780,407-20,785,260 forward strand.

WBcel235:BX284605.5

About this gene

This gene has 6 transcripts (splice variants), 50 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F38A6.3d.1	2856	665aa	F38A6.3d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EGD2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F38A6.3b.1	2660	721aa	F38A6.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EGD2	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F38A6.3a.1	2647	719aa	F38A6.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EGD2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F38A6.3f.1	2142	713aa	F38A6.3f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0K3AXG6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F38A6.3e.1	2136	711aa	F38A6.3e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EGD2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F38A6.3c.1	1576	503aa	F38A6.3c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EGD2	-	-

.

Summary

.

.