Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
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External references
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DB built by WormBase

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Gene: hpk-1 WBGene00001994

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Description

Homeodomain-interacting protein kinase 1 [Source:NCBI gene;Acc:180695]

Location

Chromosome X: 4,210,571-4,217,290 reverse strand.

WBcel235:BX284606.5

About this gene

This gene has 5 transcripts (splice variants), 57 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F20B6.8c.2	3955	740aa	F20B6.8c.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ70	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F20B6.8b.1	3909	846aa	F20B6.8b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ70	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	F20B6.8a.1	3682	821aa	F20B6.8a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ70	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F20B6.8c.1	3517	740aa	F20B6.8c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ70	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F20B6.8c.3	2445	740aa	F20B6.8c.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ70	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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