Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Gene: shn-1 WBGene00006444

Description

Protein shank [Source:NCBI gene;Acc:174739]

Location

WBcel235:BX284602.5

About this gene

This gene has 3 transcripts (splice variants) and 84 orthologues.

Transcripts

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	C33B4.3c.1	3866	1140aa	C33B4.3c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7WN72	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C33B4.3b.1	3819	993aa	C33B4.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7WN72	-	-
-	C33B4.3a.1	3751	1110aa	C33B4.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7WN72	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary