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DB built by WormBase

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Gene: mdt-15 WBGene00007016

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Description

Mediator of RNA polymerase II transcription subunit 15 [Source:NCBI gene;Acc:175817]

Location

Chromosome III: 5,828,557-5,833,751 reverse strand.

WBcel235:BX284603.4

About this gene

This gene has 5 transcripts (splice variants), 204 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	R12B2.5a.1	4270	780aa	R12B2.5a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q21955	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	R12B2.5b.2	4232	777aa	R12B2.5b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q21955	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	R12B2.5a.2	3794	780aa	R12B2.5a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q21955	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	R12B2.5b.1	3780	777aa	R12B2.5b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q21955	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	R12B2.5a.3	3723	780aa	R12B2.5a.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q21955	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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