Summary
- Splice variants
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Sequence
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Literature
Metazoan Compara
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Gene: ncam-1 WBGene00017184

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Description

NCAM (neural cell adhesion molecule) homolog [Source:NCBI gene;Acc:180418]

Location

Chromosome X: 691,913-703,047 forward strand.

WBcel235:BX284606.5

About this gene

This gene has 5 transcripts (splice variants), 1630 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F02G3.1a.1	4307	928aa	F02G3.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q19128	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F02G3.1a.2	3347	928aa	F02G3.1a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q19128	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F02G3.1c.1	3331	955aa	F02G3.1c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ86	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F02G3.1a.3	3215	928aa	F02G3.1a.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q19128	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F02G3.1b.1	3196	913aa	F02G3.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T3E5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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