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Summary
- Splice variants
- Transcript comparison
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Sequence
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Metazoan Compara
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DB built by WormBase

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Gene: nhx-5 WBGene00003733

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Description

Sodium/hydrogen exchanger [Source:NCBI gene;Acc:181258]

Location

Chromosome X: 10,576,953-10,581,044 forward strand.

WBcel235:BX284606.5

About this gene

This gene has 4 transcripts (splice variants), 65 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F57C7.2a.1	2360	630aa	F57C7.2a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5ED88	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	F57C7.2b.2	2510	611aa	F57C7.2b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5ECW8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F57C7.2b.1	2412	611aa	F57C7.2b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5ECW8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F57C7.2b.3	2331	611aa	F57C7.2b.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5ECW8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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