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DB built by WormBase

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Gene: pmk-2 WBGene00004056

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Description

Mitogen-activated protein kinase pmk-2; Protein kinase domain-containing protein [Source:NCBI gene;Acc:177611]

Location

Chromosome IV: 8,143,500-8,148,648 forward strand.

WBcel235:BX284604.4

About this gene

This gene has 4 transcripts (splice variants), 248 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F42G8.3a.1	1537	402aa	F42G8.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MXI4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F42G8.3b.1	1511	397aa	F42G8.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MXI4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F42G8.3c.1	600	199aa	F42G8.3c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	W6SBC9	-	-
-	F42G8.3d.1	585	194aa	F42G8.3d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	W6RQY6	-	-

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Summary

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