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DB built by WormBase

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Gene: sax-7 WBGene00004732

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Description

Fibronectin type-III domain-containing protein [Source:NCBI gene;Acc:177602]

Location

Chromosome IV: 8,062,659-8,084,087 forward strand.

WBcel235:BX284604.4

About this gene

This gene has 6 transcripts (splice variants), 24 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	C18F3.2c.1	5393	1331aa	C18F3.2c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q53U87	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C18F3.2b.1	4953	1328aa	C18F3.2b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4PIU9	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	C18F3.2a.1	4942	1144aa	C18F3.2a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18100	-	-
-	C18F3.2d.1	3444	1147aa	C18F3.2d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q53U86	-	-
-	C18F3.2f.1	2455	249aa	C18F3.2f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	W6RTH3	-	-
-	C18F3.2e.1	759	252aa	C18F3.2e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	W6RRX6	-	-

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Summary

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