Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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- Gene tree (Insects)
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- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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- GO: Anatomical entity
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DB built by WormBase

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Gene: sop-3 WBGene00004946

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Description

Mediator of RNA polymerase II transcription subunit 1.1 [Source:NCBI gene;Acc:171840]

Location

Chromosome I: 2,761,158-2,776,104 reverse strand.

WBcel235:BX284601.5

About this gene

This gene has 7 transcripts (splice variants), 1 orthologue and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y71F9B.10c.1	4625	1481aa	Y71F9B.10c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A078BPF6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	Y71F9B.10a.1	4603	1475aa	Y71F9B.10a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9N4G4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y71F9B.10g.1	4334	1383aa	Y71F9B.10g.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S9MMF7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y71F9B.10b.1	4302	1377aa	Y71F9B.10b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9N4G4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y71F9B.10e.1	3498	1165aa	Y71F9B.10e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A078BQI3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y71F9B.10d.1	3480	1159aa	Y71F9B.10d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A078BPE0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y71F9B.10f.1	423	140aa	Y71F9B.10f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A078BTJ0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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