Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
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- GO: Anatomical entity
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Genetic Variation
- Variant table
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- Structural variants
Gene expression
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Molecular interactions
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DB built by WormBase

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Gene: tnt-3 WBGene00006588

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Description

TropoNin T [Source:NCBI gene;Acc:181052]

Location

Chromosome X: 7,937,633-7,945,099 reverse strand.

WBcel235:BX284606.5

About this gene

This gene has 11 transcripts (splice variants), 45 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	C14F5.3e.1	4191	1235aa	C14F5.3e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V6M4Y3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	C14F5.3d.1	4045	1186aa	C14F5.3d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B9WRS6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
tnt-3-211	C14F5.3b.1	3963	1197aa	C14F5.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KYL8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C14F5.3a.1	1517	382aa	C14F5.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KYL7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C14F5.3c.1	1462	279aa	C14F5.3c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KYL9	-	-
-	C14F5.3c.4	1454	279aa	C14F5.3c.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KYL9	-	-
-	C14F5.3a.2	1453	382aa	C14F5.3a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KYL7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C14F5.3f.1	1416	333aa	C14F5.3f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0IK50	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
tnt-3-210	C14F5.3c.3	1403	279aa	C14F5.3c.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KYL9	-	-
-	C14F5.3c.2	1315	279aa	C14F5.3c.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KYL9	-	-
-	C14F5.3f.2	1285	333aa	C14F5.3f.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0IK50	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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