Summary
- Splice variants
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Sequence
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Literature
Metazoan Compara
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- Gene tree (Insects)
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- Orthologues
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Pan-taxonomic Compara
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DB built by WormBase

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Gene: lsy-22 WBGene00009188

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Description

Uncharacterized protein [Source:NCBI gene;Acc:172536]

Location

Chromosome I: 7,704,511-7,718,639 reverse strand.

WBcel235:BX284601.5

About this gene

This gene has 8 transcripts (splice variants) and 4 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F27D4.2a.2	1989	293aa	F27D4.2a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q93616	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F27D4.2b.1	1829	291aa	F27D4.2b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7LPI4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F27D4.2a.3	1816	293aa	F27D4.2a.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q93616	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F27D4.2b.2	1815	291aa	F27D4.2b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7LPI4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F27D4.2b.3	1811	291aa	F27D4.2b.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7LPI4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F27D4.2a.4	1798	293aa	F27D4.2a.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q93616	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F27D4.2b.4	1761	291aa	F27D4.2b.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7LPI4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F27D4.2a.1	1758	293aa	F27D4.2a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q93616	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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