Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by WormBase

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Gene: xbx-6 WBGene00009580

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Description

X-BoX promoter element regulated [Source:UniProtKB/TrEMBL;Acc:Q8MQ56]

Location

Chromosome V: 9,703,055-9,707,824 forward strand.

WBcel235:BX284605.5

About this gene

This gene has 7 transcripts (splice variants), 91 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F40F9.1b.2	1369	296aa	F40F9.1b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ55	NP_505500	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	F40F9.1b.3	1308	296aa	F40F9.1b.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ55	NP_505500	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	F40F9.1a.2	1274	296aa	F40F9.1a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ56	NP_741597	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	F40F9.1b.1	1247	296aa	F40F9.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ55	NP_505500	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	F40F9.1a.3	1213	296aa	F40F9.1a.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ56	NP_741597	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	F40F9.1a.1	1178	296aa	F40F9.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ56	NP_741597	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
-	F40F9.1c	1331	No protein	-	A non-coding gene.ncRNA	-	-

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Summary

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Gene-based displays