Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by WormBase

.

Gene: xbx-6 WBGene00009580

.

Description

X-BoX promoter element regulated [Source:NCBI gene;Acc:179361]

Location

Chromosome V: 9,703,055-9,707,835 forward strand.

WBcel235:BX284605.5

About this gene

This gene has 6 transcripts (splice variants), 71 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F40F9.1b.2	1574	296aa	F40F9.1b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ55	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F40F9.1a.2	1252	296aa	F40F9.1a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ56	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F40F9.1b.3	1252	296aa	F40F9.1b.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ55	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F40F9.1b.1	1220	296aa	F40F9.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ55	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F40F9.1a.1	1189	296aa	F40F9.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQ56	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
-	F40F9.1c	1331	No protein	-	A non-coding gene.ncRNA	-	-	-

.

Summary

.

.