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Summary
- Splice variants
- Transcript comparison
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Sequence
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Metazoan Compara
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DB built by WormBase

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Gene: pkn-1 WBGene00009793

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Description

Protein kinase C [Source:NCBI gene;Acc:181244]

Location

Chromosome X: 10,397,242-10,402,576 forward strand.

WBcel235:BX284606.5

About this gene

This gene has 4 transcripts (splice variants), 90 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F46F6.2d.1	4215	1137aa	F46F6.2d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0ILM7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F46F6.2b.1	4193	1131aa	F46F6.2b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EGE3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F46F6.2c.1	3858	1018aa	F46F6.2c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0IL76	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F46F6.2a.1	3836	1012aa	F46F6.2a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EFX2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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