Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
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External references
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DB built by WormBase

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Gene: F54D5.15 WBGene00010057

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Description

Uncharacterized protein [Source:NCBI gene;Acc:174770]

Location

Chromosome II: 11,558,706-11,564,227 reverse strand.

WBcel235:BX284602.5

About this gene

This gene has 5 transcripts (splice variants) and 5 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F54D5.15a.1	1833	563aa	F54D5.15a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9XVW8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F54D5.15b.1	1814	488aa	F54D5.15b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q65ZB4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F54D5.15b.3	1691	488aa	F54D5.15b.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q65ZB4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F54D5.15c.1	1686	561aa	F54D5.15c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q65ZB5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F54D5.15b.2	1660	488aa	F54D5.15b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q65ZB4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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