Summary
- Splice variants
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DB built by WormBase

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Gene: Y79H2A.3 WBGene00013580

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Description

Uncharacterized protein [Source:NCBI gene;Acc:176638]

Location

Chromosome III: 12,031,516-12,052,306 reverse strand.

WBcel235:BX284603.4

About this gene

This gene has 7 transcripts (splice variants) and 8 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y79H2A.3a.1	6054	1951aa	Y79H2A.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9U1R8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	Y79H2A.3d.1	6036	1944aa	Y79H2A.3d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H8ESF9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y79H2A.3e.1	6008	1939aa	Y79H2A.3e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H8ESG0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y79H2A.3f.1	4605	1534aa	Y79H2A.3f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H8ESF8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y79H2A.3g.1	3930	1309aa	Y79H2A.3g.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H8ESF7	-	-
-	Y79H2A.3b.1	3282	1093aa	Y79H2A.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K705	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y79H2A.3c.1	3271	1086aa	Y79H2A.3c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H8ESF6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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