Summary
- Splice variants
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DB built by WormBase

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Gene: denn-4 WBGene00018681

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Description

DENN domain type RAB GEF [Source:NCBI gene;Acc:186100]

Location

Chromosome IV: 1,924,001-1,948,080 forward strand.

WBcel235:BX284604.4

About this gene

This gene has 8 transcripts (splice variants) and 86 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F52C12.4d.1	4647	1548aa	F52C12.4d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PBM1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F52C12.4g.1	5404	1544aa	F52C12.4g.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PEG9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F52C12.4a.1	5366	1533aa	F52C12.4a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PRB3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F52C12.4b.1	4776	1535aa	F52C12.4b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PEG5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F52C12.4e.1	4764	1531aa	F52C12.4e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PM26	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F52C12.4c.1	4641	1546aa	F52C12.4c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PB89	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F52C12.4h.1	4641	1546aa	F52C12.4h.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PB94	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F52C12.4f.1	4602	1533aa	F52C12.4f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PRB8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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