Summary
- Splice variants
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DB built by WormBase

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Gene: ZK688.5 WBGene00022800

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Description

Ubiquitin-like domain-containing protein [Source:NCBI gene;Acc:176108]

Location

Chromosome III: 7,885,084-7,891,623 reverse strand.

WBcel235:BX284603.4

About this gene

This gene has 8 transcripts (splice variants) and 69 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	ZK688.5e.1	5317	1639aa	ZK688.5e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A679L8U9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	ZK688.5d.1	5359	1614aa	ZK688.5d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	L8EC34	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZK688.5b.1	5344	1612aa	ZK688.5b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34675	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZK688.5a.1	5300	1637aa	ZK688.5a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34675	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZK688.5c.3	5300	173aa	ZK688.5c.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	L8E805	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZK688.5c.4	5286	173aa	ZK688.5c.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	L8E805	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZK688.5c.2	5263	173aa	ZK688.5c.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	L8E805	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZK688.5c.1	5261	173aa	ZK688.5c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	L8E805	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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