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Summary
- Splice variants
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DB built by FlyBase

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Gene: kn FBgn0001319

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Description

knot

Gene Synonyms

Location

Primary_assembly 2R: 14,772,650-14,807,061 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 5 transcripts (splice variants) and 85 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
kn-RC	FBtr0112810	3339	689aa	FBpp0111722	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYD9 Q6IGF5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
kn-RB	FBtr0112809	3926	575aa	FBpp0111721	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E2QCN0 P56721	-	-
kn-RA	FBtr0087465	3460	557aa	FBpp0086595	Gene/transcipt that contains an open reading frame (ORF).Protein coding	V5LWW0	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
kn-RD	FBtr0301400	3457	556aa	FBpp0290614	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z9V2	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
kn-RE	FBtr0329882	2927	524aa	FBpp0302917	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFQ1	-	-

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Summary

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