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- Splice variants
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DB built by FlyBase

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Gene: rut FBgn0003301

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Description

rutabaga

Gene Synonyms

Location

Primary_assembly X: 14,787,478-14,826,073 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 7 transcripts (splice variants), 95 orthologues and 25 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
rut-RA	FBtr0073992	9269	2248aa	FBpp0073809	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P32870	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
rut-RG	FBtr0340467	9038	2171aa	FBpp0309409	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PJN1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rut-RD	FBtr0333655	8976	2171aa	FBpp0305811	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PJN1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rut-RC	FBtr0333654	8963	2146aa	FBpp0305810	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHL3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rut-RB	FBtr0305581	8690	2055aa	FBpp0294032	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NF51	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rut-RF	FBtr0333657	7905	1507aa	FBpp0305813	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PH52	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rut-RE	FBtr0333656	7557	1391aa	FBpp0305812	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PEL4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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