Summary
- Splice variants
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Metazoan Compara
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Pan-taxonomic Compara
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Genetic Variation
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DB built by FlyBase

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Gene: srp FBgn0003507

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Description

serpent

Gene Synonyms

Location

Primary_assembly 3R: 15,986,152-16,004,085 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 7 transcripts (splice variants), 21 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
srp-RA	FBtr0083215	4459	1264aa	FBpp0082669	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WHE9 P52172	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
srp-RB	FBtr0083216	4414	1249aa	FBpp0082670	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
srp-RD	FBtr0100595	3841	746aa	FBpp0100052	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E2QCY6	-	-
srp-RE	FBtr0306244	3796	731aa	FBpp0297354	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6J1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
srp-RG	FBtr0335424	3377	469aa	FBpp0307407	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHL1 A8WHE9	-	-
srp-RF	FBtr0335423	3274	746aa	FBpp0307406	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E2QCY6	-	-
srp-RH	FBtr0479894	3037	781aa	FBpp0428227	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EES8	-	-

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Summary

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