Summary
- Splice variants
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: Tm1 FBgn0003721

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Description

Tropomyosin 1

Gene Synonyms

Location

Primary_assembly 3R: 15,278,220-15,308,779 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 18 transcripts (splice variants), 82 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Tm1-RE	FBtr0089965	2531	711aa	FBpp0088904	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGY1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Tm1-RH	FBtr0089963	3054	678aa	FBpp0088902	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IG84	-	-
Tm1-RC	FBtr0089962	2651	441aa	FBpp0088901	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95TA3	-	-
Tm1-RI	FBtr0089961	2501	441aa	FBpp0088900	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95TA3	-	-
Tm1-RG	FBtr0089964	2485	285aa	FBpp0088903	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Tm1-RL	FBtr0089968	2194	284aa	FBpp0089024	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Tm1-RA	FBtr0089960	2003	252aa	FBpp0088899	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Tm1-RT	FBtr0479735	1898	282aa	FBpp0428078	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EG56	-	-
Tm1-RR	FBtr0333917	1861	250aa	FBpp0306045	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KG68	-	-
Tm1-RF	FBtr0089959	1684	501aa	FBpp0088898	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H1UUP7 Q058U3	-	-
Tm1-RK	FBtr0089957	1665	518aa	FBpp0088896	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P49455 Q058U3	-	-
Tm1-RO	FBtr0305654	1503	285aa	FBpp0296934	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Tm1-RQ	FBtr0305656	1318	250aa	FBpp0296936	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K661 C1C3D3	-	-
Tm1-RM	FBtr0301959	1253	285aa	FBpp0291171	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P06754 Q6LEH1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Tm1-RN	FBtr0301960	1253	285aa	FBpp0291172	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NN28	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Tm1-RS	FBtr0333918	1253	285aa	FBpp0306046	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KG06	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Tm1-RJ	FBtr0089967	1248	285aa	FBpp0088906	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Tm1-RP	FBtr0305655	752	161aa	FBpp0296935	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6Y8	-	-

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Summary

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