Summary
- Splice variants
- Transcript comparison
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Sequence
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: ct FBgn0004198

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Description

cut

Gene Synonyms

Location

Primary_assembly X: 7,608,428-7,678,859 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 3 transcripts (splice variants) and 73 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
ct-RA	FBtr0071068	10438	2175aa	FBpp0071026	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P10180	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ct-RE	FBtr0331733	11755	2174aa	FBpp0304122	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGW9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ct-RD	FBtr0305134	10732	2165aa	FBpp0293664	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEA5 Q8SWV1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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