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DB built by FlyBase

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Gene: Syt1 FBgn0004242

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Description

Synaptotagmin 1

Gene Synonyms

Location

Primary_assembly 2L: 2,772,327-2,799,979 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 8 transcripts (splice variants), 84 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Syt1-RA	FBtr0077726	3993	474aa	FBpp0077410	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P21521	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Syt1-RI	FBtr0345331	5872	472aa	FBpp0311487	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J4C1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Syt1-RE	FBtr0332218	5196	472aa	FBpp0304523	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Syt1-RC	FBtr0077728	5110	472aa	FBpp0077412	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J4C1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Syt1-RG	FBtr0332220	4593	331aa	FBpp0304525	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Syt1-RF	FBtr0332219	4548	170aa	FBpp0304524	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Syt1-RH	FBtr0343993	3990	473aa	FBpp0310442	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J979	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Syt1-RB	FBtr0077727	3987	472aa	FBpp0077411	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J4C1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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