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DB built by FlyBase

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Gene: pdm2 FBgn0004394

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Description

POU domain protein 2

Gene Synonyms

Location

Primary_assembly 2L: 12,657,165-12,686,306 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 4 transcripts (splice variants), 64 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
pdm2-RD	FBtr0340540	4286	893aa	FBpp0309439	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VK71 X2J9L4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
pdm2-RC	FBtr0340539	3729	893aa	FBpp0309438	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VK71 X2J9L4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
pdm2-RB	FBtr0080392	3627	893aa	FBpp0079973	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VK71 X2J9L4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
pdm2-RA	FBtr0080393	2171	498aa	FBpp0079974	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C3KGP3 H0RNL2 P31369	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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