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DB built by FlyBase

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Gene: brat FBgn0010300

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Description

brain tumor

Gene Synonyms

Location

Primary_assembly 2L: 19,133,816-19,179,758 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 5 transcripts (splice variants), 85 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
brat-RE	FBtr0336627	6258	1061aa	FBpp0307610	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B4YXN6 B4YXN7 B4YXP0 B4YXP2 B4YXP6 M9MSJ1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
brat-RC	FBtr0081160	12088	1037aa	FBpp0089239	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHB3 Q8MQJ9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
brat-RB	FBtr0081159	4963	1037aa	FBpp0080703	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B4YXP4 E8NHB3 Q8MQJ9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
brat-RF	FBtr0344846	4869	1037aa	FBpp0311161	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHB3 Q8MQJ9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
brat-RA	FBtr0081158	4544	1037aa	FBpp0080702	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHB3 Q8MQJ9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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