Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
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Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
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DB built by FlyBase

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Gene: alien FBgn0013746

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Description

alien

Gene Synonyms

Location

Primary_assembly 2L: 8,993,818-8,997,379 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 4 transcripts (splice variants), 75 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
alien-RD	FBtr0339550	3172	444aa	FBpp0308633	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFB5 Q94899	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
alien-RB	FBtr0079781	2321	444aa	FBpp0089195	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFB5 Q94899	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
alien-RE	FBtr0343095	1574	444aa	FBpp0309805	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFB5 Q94899	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
alien-RA	FBtr0079780	1508	444aa	FBpp0079381	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFB5 Q94899	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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