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DB built by FlyBase

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Gene: cher FBgn0014141

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Description

cheerio

Gene Synonyms

Location

Primary_assembly 3R: 17,091,533-17,125,389 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 10 transcripts (splice variants), 74 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
cher-RO	FBtr0479929	8392	2577aa	FBpp0428261	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHN1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
cher-RP	FBtr0479930	8377	2572aa	FBpp0428262	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KG47	-	-
cher-RG	FBtr0290014	8128	2399aa	FBpp0288453	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSF4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
cher-RM	FBtr0337101	8067	2429aa	FBpp0308015	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGT8 Q29R34 Q8T3K7	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
cher-RA	FBtr0089471	7561	2210aa	FBpp0088478	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GQV2 Q9VEN1	-	-
cher-RI	FBtr0303364	7500	2240aa	FBpp0292427	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JCY6	-	-
cher-RF	FBtr0290013	3602	919aa	FBpp0288452	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0L2 C7LAD1	-	-
cher-RH	FBtr0290015	3502	857aa	FBpp0288454	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V310 C7LAD0	-	-
cher-RK	FBtr0332167	3281	838aa	FBpp0304476	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGB3	-	-
cher-RB	FBtr0089473	3219	838aa	FBpp0088480	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGB3	-	-

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Summary

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