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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: pcm FBgn0020261

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Description

pacman

Gene Synonyms

Location

Primary_assembly X: 19,485,759-19,492,011 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 2 transcripts (splice variants), 79 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
pcm-RB	FBtr0302082	5384	1613aa	FBpp0291292	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJR3 Q9XZU2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
pcm-RA	FBtr0074784	5260	1612aa	FBpp0074553	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VWI1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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