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DB built by FlyBase

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Gene: RhoGEF2 FBgn0023172

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Description

Rho guanine nucleotide exchange factor 2

Gene Synonyms

Location

Primary_assembly 2R: 17,027,190-17,044,653 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 5 transcripts (splice variants), 89 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
RhoGEF2-RF	FBtr0086970	8486	2559aa	FBpp0086124	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAN6 E8NH10 O44113 O44381 Q8T9E3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RhoGEF2-RG	FBtr0305083	8480	2557aa	FBpp0293620	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K7T7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RhoGEF2-RD	FBtr0086971	8475	2559aa	FBpp0086125	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAN6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RhoGEF2-RH	FBtr0340124	8166	2456aa	FBpp0309117	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFF8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RhoGEF2-RE	FBtr0086969	7424	2205aa	FBpp0086123	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAN7	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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