Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
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- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: vig FBgn0024183

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Description

vasa intronic gene

Gene Synonyms

Location

Primary_assembly 2L: 15,062,931-15,070,316 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 4 transcripts (splice variants), 59 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
vig-RD	FBtr0080718	3209	490aa	FBpp0080277	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V426	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
vig-RB	FBtr0080721	3164	490aa	FBpp0080280	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V426	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
vig-RA	FBtr0080720	1918	490aa	FBpp0080279	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V426	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
vig-RC	FBtr0080719	1838	490aa	FBpp0080278	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V426	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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