Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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- Gene tree (Protostomes)
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- Orthologues
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Pan-taxonomic Compara
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Genetic Variation
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DB built by FlyBase

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Gene: CG4293 FBgn0024983

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Gene Synonyms

Location

Primary_assembly X: 527,941-530,291 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 5 transcripts (splice variants), 67 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG4293-RD	FBtr0100476	1976	441aa	FBpp0099909	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O76896	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG4293-RB	FBtr0070090	1790	441aa	FBpp0070085	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O76896	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG4293-RA	FBtr0070089	1689	441aa	FBpp0070084	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O76896	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG4293-RE	FBtr0334033	1683	439aa	FBpp0306149	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGB8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG4293-RC	FBtr0100475	1677	441aa	FBpp0099908	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O76896	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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