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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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- Gene history

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DB built by FlyBase

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Gene: SF1 FBgn0025571

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Description

Splicing factor 1

Gene Synonyms

Location

Primary_assembly 3R: 17,540,421-17,545,148 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 3 transcripts (splice variants), 70 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
SF1-RA	FBtr0083456	2784	787aa	FBpp0082897	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SXI7 Q95S23 Q9U1J9 Q9VEJ1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
SF1-RC	FBtr0331707	2708	323aa	FBpp0304096	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGU8	-	-
SF1-RB	FBtr0331706	1533	347aa	FBpp0304095	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KG60 H1UUB8	-	-

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Summary

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