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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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DB built by FlyBase

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Gene: santa-maria FBgn0025697

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Description

scavenger receptor acting in neural tissue and majority of rhodopsin is absent

Gene Synonyms

Location

Primary_assembly 2L: 7,445,355-7,451,244 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 2 transcripts (splice variants), 117 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
santa-maria-RC	FBtr0346571	5563	563aa	FBpp0312169	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VM10	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
santa-maria-RA	FBtr0079464	2302	563aa	FBpp0079088	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9QPI3 Q961H6 Q9VM10	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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