Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
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External references
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ID History
- Gene history

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DB built by FlyBase

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Gene: jim FBgn0027339

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Description

jim

Gene Synonyms

Location

Primary_assembly 3L: 22,789,233-22,835,194 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 7 transcripts (splice variants), 23 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
jim-RF	FBtr0330076	6714	938aa	FBpp0303109	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGG2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
jim-RC	FBtr0078582	13458	820aa	FBpp0078231	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NN10 Q7KAH0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
jim-RE	FBtr0304985	12379	825aa	FBpp0293522	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFP1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
jim-RI	FBtr0333213	6193	792aa	FBpp0305415	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PIL6	-	-
jim-RH	FBtr0333212	5620	820aa	FBpp0305414	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KAH0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
jim-RG	FBtr0333211	5542	794aa	FBpp0305413	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PG92 Q8IG96	-	-
jim-RD	FBtr0100184	4749	820aa	FBpp0099541	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KAH0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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