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DB built by FlyBase

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Gene: Trf4-1 FBgn0030049

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Description

Topoisomerase related function 4-1

Gene Synonyms

Location

Primary_assembly X: 8,560,322-8,570,159 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 7 transcripts (splice variants), 23 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Trf4-1-RJ	FBtr0331725	6812	1001aa	FBpp0304114	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVS9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Trf4-1-RG	FBtr0112964	6507	802aa	FBpp0111877	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JV36	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trf4-1-RE	FBtr0071213	4400	1001aa	FBpp0071159	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVS9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Trf4-1-RI	FBtr0331724	4238	1001aa	FBpp0304113	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVS9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Trf4-1-RC	FBtr0071212	4205	1001aa	FBpp0071158	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVS9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Trf4-1-RF	FBtr0112963	3981	802aa	FBpp0111876	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JV36 A9YK03 A9YK04 A9YK05 A9YK10 A9YK12 F6JBP6 F6JBQ3 F6JBQ6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Trf4-1-RH	FBtr0331723	3975	1001aa	FBpp0304112	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YK03 A9YK04 A9YK05 A9YK10 A9YK12 F6JBP6 F6JBQ3 F6JBQ6 Q7KVS9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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